GeneNet Database: Automated Visualization of Gene Networks and their Dynamics.

F. Kolpakov, E. Ananko, G. Kolesov, N. Kolchanov: GeneNet Database: Automated Visualization of Gene Networks and their Dynamics CSIT 1999 : E/E

Abstract

An object-oriented database GeneNet has been created. It contains the formalized descriptions of the gene networks and their dynamics based on experimental data. The GeneNet graphical user interface written in Java provides automated generation of the gene network diagrams, visualization of their dynamics, and exploration of the GeneNet database through the Internet. A system of filters allows particular components of the network to be selected for visualization. The graphical interface for data input and editing through the Internet in a dialogue mode has been developed to provide a rapid filling of the database. The GeneNet database is available at http://wwwmgs.bionet.nsc.ru/systems/MGL/GeneNet/.

Copyright © 1999 by the Institute for Contemporary Education "JurInfoR-MSU". Permission to copy without fee all or part of this material is granted provided that the copies are not made or distributed for direct commercial advantage, the CSIT copyright notice and the title of the publication and its date appear, and notice is given that copying is by permission of the Institute for Contemporary Education JMSUICE. To copy otherwise, or to republish, requires a fee and/or special permission from the JMSUICE.

Printed Edition

Ch. Freytag and V. Wolfengagen (Eds.): CSIT'99, Proceedings of 1st International Workshop on Computer Science and Information Technologies, January 18-22, 1999, Moscow, Russia. MEPhI Publishing 1999, ISBN 5-7262-0263-5

Electronic Edition